Rockin' Baked Beans

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Extra-virgin olive oil

1 large onion, cut into 1/2-inch dice

1 green pepper, stem, seeds and pith removed, cut into 1/4-inch dice

Large pinch crushed red pepper flakes

Kosher salt

4 garlic cloves, smashed and finely chopped

2 links Italian sausage, casing removed and crumbled

1/2 cup tomato paste

1 teaspoon cumin seeds, toasted and ground

2 tablespoons Dijon mustard

2 tablespoons apple cider vinegar

2 tablespoons molasses

2 (28-ounce) cans navy beans

1 1/2 cups water, plus 1 cup

5 slices bacon